Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage2/nyt/Projects/Juicer-Out/2022-12-15_Novogene/Paul/kid_wt3 -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10 Sequenced Read Pairs: 325,407 Normal Paired: 164,471 (50.54%) Chimeric Paired: 120,495 (37.03%) Chimeric Ambiguous: 36,117 (11.10%) Unmapped: 4,324 (1.33%) Ligation Motif Present: 216,961 (66.67%) Alignable (Normal+Chimeric Paired): 284,966 (87.57%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2022-12-15T17:19:08,714] [Globals.java:138] [main] Development mode is enabled Unique Reads: 234,977 (72.21%) PCR Duplicates: 48,058 (14.77%) Optical Duplicates: 1,931 (0.59%) Library Complexity Estimate: 736,171 Intra-fragment Reads: 52,377 (16.10% / 22.29%) Below MAPQ Threshold: 35,270 (10.84% / 15.01%) Hi-C Contacts: 147,330 (45.28% / 62.70%) Ligation Motif Present: 110,960 (34.10% / 47.22%) 3' Bias (Long Range): 66% - 34% Pair Type intra chrom %(L-I-O-R): 17% - 49% - 17% - 17% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 24% Cis/all (FF and RR orient): 66.4% Inter-chromosomal: 37,729 (11.59% / 16.06%) Intra-chromosomal: 109,601 (33.68% / 46.64%) Short Range (<20,000bp): 46,509 (14.29% / 19.79%) Long Range (>20,000bp): 63,092 (19.39% / 26.85%)