Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage2/nyt/Projects/Juicer-Out/2022-12-15_Novogene/Paul/kid_wt3 -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  325,407
 Normal Paired: 164,471 (50.54%)
 Chimeric Paired: 120,495 (37.03%)
 Chimeric Ambiguous: 36,117 (11.10%)
 Unmapped: 4,324 (1.33%)
 Ligation Motif Present: 216,961 (66.67%)
Alignable (Normal+Chimeric Paired): 284,966 (87.57%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-12-15T17:19:08,714]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 234,977 (72.21%)
PCR Duplicates: 48,058 (14.77%)
Optical Duplicates: 1,931 (0.59%)
Library Complexity Estimate: 736,171
Intra-fragment Reads: 52,377 (16.10% / 22.29%)
Below MAPQ Threshold: 35,270 (10.84% / 15.01%)
Hi-C Contacts: 147,330 (45.28% / 62.70%)
 Ligation Motif Present: 110,960  (34.10% / 47.22%)
 3' Bias (Long Range): 66% - 34%
 Pair Type intra chrom %(L-I-O-R): 17% - 49% - 17% - 17%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 24%
 Cis/all (FF and RR orient): 66.4%
Inter-chromosomal: 37,729  (11.59% / 16.06%)
Intra-chromosomal: 109,601  (33.68% / 46.64%)
Short Range (<20,000bp): 46,509  (14.29% / 19.79%)
Long Range (>20,000bp): 63,092  (19.39% / 26.85%)