Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage2/nyt/Projects/Juicer-Out/2022-12-15_Novogene/Paul/kid_wt4 -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  279,158
 Normal Paired: 151,230 (54.17%)
 Chimeric Paired: 89,537 (32.07%)
 Chimeric Ambiguous: 26,829 (9.61%)
 Unmapped: 11,562 (4.14%)
 Ligation Motif Present: 162,393 (58.17%)
Alignable (Normal+Chimeric Paired): 240,767 (86.25%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-12-15T17:20:56,098]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 191,647 (68.65%)
PCR Duplicates: 47,222 (16.92%)
Optical Duplicates: 1,898 (0.68%)
Library Complexity Estimate: 521,584
Intra-fragment Reads: 47,316 (16.95% / 24.69%)
Below MAPQ Threshold: 37,024 (13.26% / 19.32%)
Hi-C Contacts: 107,307 (38.44% / 55.99%)
 Ligation Motif Present: 74,391  (26.65% / 38.82%)
 3' Bias (Long Range): 65% - 35%
 Pair Type intra chrom %(L-I-O-R): 15% - 54% - 15% - 15%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 29%
 Cis/all (FF and RR orient): 65.9%
Inter-chromosomal: 26,163  (9.37% / 13.65%)
Intra-chromosomal: 81,144  (29.07% / 42.34%)
Short Range (<20,000bp): 39,258  (14.06% / 20.48%)
Long Range (>20,000bp): 41,886  (15.00% / 21.86%)