Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.15" 2022-04-19; /Data/Tools/juicer1.6_compact/scripts/juicer.sh -t 10 -D /Data/Tools/juicer1.6_compact -g mm10 -z /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.fasta -p /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.chromsizes.txt -s DpnII -y /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.restriction_sites.DpnII.txt -d /Data/NGS_Data/2022-05-11-BGI/Results/mef_kit30_1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  45,225,751
 Normal Paired: 17,219,676 (38.07%)
 Chimeric Paired: 22,904,589 (50.65%)
 Chimeric Ambiguous: 4,766,396 (10.54%)
 Unmapped: 335,090 (0.74%)
 Ligation Motif Present: 42,522,929 (94.02%)
Alignable (Normal+Chimeric Paired): 40,124,265 (88.72%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-06-07T18:04:19,636]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 35,407,406 (78.29%)
PCR Duplicates: 4,716,859 (10.43%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 157,005,179
Intra-fragment Reads: 5,780,902 (12.78% / 16.33%)
Below MAPQ Threshold: 4,998,439 (11.05% / 14.12%)
Hi-C Contacts: 24,628,065 (54.46% / 69.56%)
 Ligation Motif Present: 23,490,984  (51.94% / 66.34%)
 3' Bias (Long Range): 72% - 28%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 10,903,573  (24.11% / 30.79%)
Intra-chromosomal: 13,724,492  (30.35% / 38.76%)
Short Range (<20Kb): 7,100,584  (15.70% / 20.05%)
Long Range (>20Kb): 6,623,903  (14.65% / 18.71%)