Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.15" 2022-04-19; /Data/Tools/juicer1.6_compact/scripts/juicer.sh -t 10 -D /Data/Tools/juicer1.6_compact -g mm10 -z /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.fasta -p /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.chromsizes.txt -s DpnII -y /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.restriction_sites.DpnII.txt -d /Data/NGS_Data/2022-05-11-BGI/Results/mef_kit30_2                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  13,292,625
 Normal Paired: 5,352,789 (40.27%)
 Chimeric Paired: 6,199,284 (46.64%)
 Chimeric Ambiguous: 1,633,702 (12.29%)
 Unmapped: 106,850 (0.80%)
 Ligation Motif Present: 12,395,434 (93.25%)
Alignable (Normal+Chimeric Paired): 11,552,073 (86.91%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-06-07T20:49:33,879]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 10,466,765 (78.74%)
PCR Duplicates: 1,085,308 (8.16%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 57,566,212
Intra-fragment Reads: 1,929,521 (14.52% / 18.43%)
Below MAPQ Threshold: 1,077,445 (8.11% / 10.29%)
Hi-C Contacts: 7,459,799 (56.12% / 71.27%)
 Ligation Motif Present: 7,115,437  (53.53% / 67.98%)
 3' Bias (Long Range): 70% - 30%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 3,357,229  (25.26% / 32.08%)
Intra-chromosomal: 4,102,570  (30.86% / 39.20%)
Short Range (<20Kb): 2,304,246  (17.33% / 22.01%)
Long Range (>20Kb): 1,798,324  (13.53% / 17.18%)