Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.15" 2022-04-19; /Data/Tools/juicer1.6_compact/scripts/juicer.sh -t 10 -D /Data/Tools/juicer1.6_compact -g mm10 -z /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.fasta -p /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.chromsizes.txt -s DpnII -y /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.restriction_sites.DpnII.txt -d /Data/NGS_Data/2022-05-11-BGI/Results/unc_liver_1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  3,608,240
 Normal Paired: 1,330,773 (36.88%)
 Chimeric Paired: 1,789,540 (49.60%)
 Chimeric Ambiguous: 430,093 (11.92%)
 Unmapped: 57,834 (1.60%)
 Ligation Motif Present: 2,993,716 (82.97%)
Alignable (Normal+Chimeric Paired): 3,120,313 (86.48%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-06-07T21:42:25,399]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 2,721,073 (75.41%)
PCR Duplicates: 399,240 (11.06%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 11,129,668
Intra-fragment Reads: 396,754 (11.00% / 14.58%)
Below MAPQ Threshold: 413,495 (11.46% / 15.20%)
Hi-C Contacts: 1,910,824 (52.96% / 70.22%)
 Ligation Motif Present: 1,661,979  (46.06% / 61.08%)
 3' Bias (Long Range): 65% - 35%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 362,989  (10.06% / 13.34%)
Intra-chromosomal: 1,547,835  (42.90% / 56.88%)
Short Range (<20Kb): 630,575  (17.48% / 23.17%)
Long Range (>20Kb): 917,259  (25.42% / 33.71%)