Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.15" 2022-04-19; /Data/Tools/juicer1.6_compact/scripts/juicer.sh -t 10 -D /Data/Tools/juicer1.6_compact -g mm10 -z /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.fasta -p /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.chromsizes.txt -s DpnII -y /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.restriction_sites.DpnII.txt -d /Data/NGS_Data/2022-05-11-BGI/Results/unc_liver_2                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  3,558,348
 Normal Paired: 1,426,363 (40.08%)
 Chimeric Paired: 1,728,983 (48.59%)
 Chimeric Ambiguous: 344,467 (9.68%)
 Unmapped: 58,535 (1.65%)
 Ligation Motif Present: 2,611,050 (73.38%)
Alignable (Normal+Chimeric Paired): 3,155,346 (88.67%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-06-07T22:14:57,852]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 2,752,581 (77.36%)
PCR Duplicates: 402,765 (11.32%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 11,283,998
Intra-fragment Reads: 480,237 (13.50% / 17.45%)
Below MAPQ Threshold: 385,659 (10.84% / 14.01%)
Hi-C Contacts: 1,886,685 (53.02% / 68.54%)
 Ligation Motif Present: 1,487,584  (41.81% / 54.04%)
 3' Bias (Long Range): 66% - 34%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 316,528  (8.90% / 11.50%)
Intra-chromosomal: 1,570,157  (44.13% / 57.04%)
Short Range (<20Kb): 703,536  (19.77% / 25.56%)
Long Range (>20Kb): 866,618  (24.35% / 31.48%)