Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.15" 2022-04-19; /Data/Tools/juicer1.6_compact/scripts/juicer.sh -t 10 -D /Data/Tools/juicer1.6_compact -g mm10 -z /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.fasta -p /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.chromsizes.txt -s DpnII -y /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.restriction_sites.DpnII.txt -d /Data/NGS_Data/2022-05-11-BGI/Results/wt_liver_1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  3,462,650
 Normal Paired: 1,925,328 (55.60%)
 Chimeric Paired: 1,227,958 (35.46%)
 Chimeric Ambiguous: 231,877 (6.70%)
 Unmapped: 77,487 (2.24%)
 Ligation Motif Present: 1,936,224 (55.92%)
Alignable (Normal+Chimeric Paired): 3,153,286 (91.07%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-06-07T22:44:41,932]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 2,696,108 (77.86%)
PCR Duplicates: 457,178 (13.20%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 9,795,881
Intra-fragment Reads: 773,924 (22.35% / 28.71%)
Below MAPQ Threshold: 336,504 (9.72% / 12.48%)
Hi-C Contacts: 1,585,680 (45.79% / 58.81%)
 Ligation Motif Present: 1,071,814  (30.95% / 39.75%)
 3' Bias (Long Range): 63% - 37%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 305,310  (8.82% / 11.32%)
Intra-chromosomal: 1,280,370  (36.98% / 47.49%)
Short Range (<20Kb): 745,077  (21.52% / 27.64%)
Long Range (>20Kb): 535,293  (15.46% / 19.85%)