Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.15" 2022-04-19; /Data/Tools/juicer1.6_compact/scripts/juicer.sh -t 10 -D /Data/Tools/juicer1.6_compact -g mm10 -z /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.fasta -p /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.chromsizes.txt -s DpnII -y /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.restriction_sites.DpnII.txt -d /Data/NGS_Data/2022-05-11-BGI/Results/wt_liver_2                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  3,323,244
 Normal Paired: 1,369,042 (41.20%)
 Chimeric Paired: 1,539,721 (46.33%)
 Chimeric Ambiguous: 368,014 (11.07%)
 Unmapped: 46,467 (1.40%)
 Ligation Motif Present: 2,561,690 (77.08%)
Alignable (Normal+Chimeric Paired): 2,908,763 (87.53%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-06-07T23:13:39,813]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 2,544,778 (76.58%)
PCR Duplicates: 363,985 (10.95%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 10,631,314
Intra-fragment Reads: 463,299 (13.94% / 18.21%)
Below MAPQ Threshold: 369,995 (11.13% / 14.54%)
Hi-C Contacts: 1,711,484 (51.50% / 67.25%)
 Ligation Motif Present: 1,425,405  (42.89% / 56.01%)
 3' Bias (Long Range): 64% - 36%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 361,446  (10.88% / 14.20%)
Intra-chromosomal: 1,350,038  (40.62% / 53.05%)
Short Range (<20Kb): 614,824  (18.50% / 24.16%)
Long Range (>20Kb): 735,212  (22.12% / 28.89%)