NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,214.6 |
| Mean read quality |
10.8 |
| Median read length |
4,983.0 |
| Median read quality |
14.6 |
| Number of reads |
974,121.0 |
| Read length N50 |
18,971.0 |
| STDEV read length |
12,015.2 |
| Total bases |
8,976,143,583.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
939063 (96.4%) 8782.4Mb |
| >Q7 |
862605 (88.6%) 8095.8Mb |
| >Q10 |
776025 (79.7%) 7344.6Mb |
| >Q12 |
682369 (70.0%) 6668.8Mb |
| >Q15 |
452545 (46.5%) 4891.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
35.2 (475) |
| 2 |
34.8 (214) |
| 3 |
33.3 (600) |
| 4 |
32.9 (164) |
| 5 |
32.2 (351) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
572143 (2.6) |
| 2 |
491839 (13.5) |
| 3 |
477727 (2.6) |
| 4 |
467073 (7.6) |
| 5 |
440120 (2.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot