NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
8,758.0 |
Mean read quality |
10.7 |
Median read length |
5,291.0 |
Median read quality |
14.8 |
Number of reads |
432,349.0 |
Read length N50 |
16,650.0 |
STDEV read length |
10,313.0 |
Total bases |
3,786,500,281.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
415456 (96.1%) 3713.1Mb |
>Q7 |
378083 (87.4%) 3416.7Mb |
>Q10 |
341162 (78.9%) 3106.2Mb |
>Q12 |
303193 (70.1%) 2836.8Mb |
>Q15 |
208343 (48.2%) 2126.3Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
33.3 (600) |
2 |
32.2 (351) |
3 |
31.9 (628) |
4 |
31.5 (444) |
5 |
31.0 (33) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
276529 (8.2) |
2 |
257641 (7.1) |
3 |
233685 (6.0) |
4 |
232882 (15.2) |
5 |
228103 (7.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot