NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,791.3 |
| Mean read quality |
11.3 |
| Median read length |
5,018.0 |
| Median read quality |
14.9 |
| Number of reads |
314,393.0 |
| Read length N50 |
20,894.0 |
| STDEV read length |
12,502.4 |
| Total bases |
3,078,322,313.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
305547 (97.2%) 3016.5Mb |
| >Q7 |
284712 (90.6%) 2814.3Mb |
| >Q10 |
258871 (82.3%) 2594.5Mb |
| >Q12 |
229432 (73.0%) 2387.3Mb |
| >Q15 |
154282 (49.1%) 1798.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
34.8 (214) |
| 2 |
32.9 (164) |
| 3 |
31.7 (112) |
| 4 |
31.7 (636) |
| 5 |
31.4 (231) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
467073 (7.6) |
| 2 |
326177 (13.6) |
| 3 |
317775 (12.4) |
| 4 |
279037 (5.6) |
| 5 |
278409 (4.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot