NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,285.5 |
| Mean read quality |
10.5 |
| Median read length |
4,267.0 |
| Median read quality |
13.9 |
| Number of reads |
227,379.0 |
| Read length N50 |
20,794.0 |
| STDEV read length |
14,115.6 |
| Total bases |
2,111,320,989.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
218060 (95.9%) 2052.8Mb |
| >Q7 |
199810 (87.9%) 1864.8Mb |
| >Q10 |
175992 (77.4%) 1644.0Mb |
| >Q12 |
149744 (65.9%) 1444.6Mb |
| >Q15 |
89920 (39.5%) 966.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
35.2 (475) |
| 2 |
29.5 (1968) |
| 3 |
29.1 (394) |
| 4 |
28.9 (234) |
| 5 |
28.8 (204) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
572143 (2.6) |
| 2 |
491839 (13.5) |
| 3 |
477727 (2.6) |
| 4 |
440120 (2.4) |
| 5 |
420587 (4.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot