NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,841.4 |
| Mean read quality |
19.0 |
| Median read length |
1,024.0 |
| Median read quality |
20.9 |
| Number of reads |
22,303.0 |
| Read length N50 |
7,925.0 |
| STDEV read length |
6,037.0 |
| Total bases |
63,372,141.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
22303 (100.0%) 63.4Mb |
| >Q7 |
22303 (100.0%) 63.4Mb |
| >Q10 |
22303 (100.0%) 63.4Mb |
| >Q12 |
22303 (100.0%) 63.4Mb |
| >Q15 |
21208 (95.1%) 61.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
45.0 (495) |
| 2 |
44.7 (365) |
| 3 |
42.3 (435) |
| 4 |
41.1 (278) |
| 5 |
40.4 (1097) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
95728 (22.7) |
| 2 |
92275 (24.0) |
| 3 |
92151 (24.0) |
| 4 |
90484 (26.0) |
| 5 |
87546 (17.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot