NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,503.7 |
| Mean read quality |
18.5 |
| Median read length |
772.5 |
| Median read quality |
20.1 |
| Number of reads |
29,818.0 |
| Read length N50 |
2,570.0 |
| STDEV read length |
2,915.7 |
| Total bases |
44,838,757.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
29818 (100.0%) 44.8Mb |
| >Q7 |
29818 (100.0%) 44.8Mb |
| >Q10 |
29818 (100.0%) 44.8Mb |
| >Q12 |
29818 (100.0%) 44.8Mb |
| >Q15 |
27887 (93.5%) 42.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.7 (527) |
| 2 |
41.0 (649) |
| 3 |
39.0 (561) |
| 4 |
38.9 (548) |
| 5 |
38.7 (480) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
81833 (22.8) |
| 2 |
74431 (20.2) |
| 3 |
69015 (20.0) |
| 4 |
68803 (22.0) |
| 5 |
67782 (19.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot