Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.14.1" 2022-02-08; /Data/Tools/juicer1.6_compact/scripts/juicer.sh -t 10 -D /Data/Tools/juicer1.6_compact -g hg19-pUC19 -z /Data/Tools/exoclasma/databases/hg19-pUC19/hg19-pUC19.fasta -p /Data/Tools/exoclasma/databases/hg19-pUC19/hg19-pUC19.chromsizes.txt -s NlaIII -y /Data/Tools/exoclasma/databases/hg19-pUC19/hg19-pUC19.restriction_sites.NlaIII.txt -d /Data/NGS_Data/2022-04-08-MySeq-Test/Results/61_1203_cmvNla                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  219,126
 Normal Paired: 201,335 (91.88%)
 Chimeric Paired: 12,771 (5.83%)
 Chimeric Ambiguous: 2,255 (1.03%)
 Unmapped: 2,765 (1.26%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 214,106 (97.71%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-04-19T14:23:23,266]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 213,477 (97.42%)
PCR Duplicates: 422 (0.19%)
Optical Duplicates: 207 (0.09%)
Library Complexity Estimate: 54,138,134
Intra-fragment Reads: 141,484 (64.57% / 66.28%)
Below MAPQ Threshold: 10,788 (4.92% / 5.05%)
Hi-C Contacts: 61,205 (27.93% / 28.67%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 59% - 41%
 Pair Type %(L-I-O-R): 25% - 25% - 26% - 25%
Inter-chromosomal: 1,936  (0.88% / 0.91%)
Intra-chromosomal: 59,269  (27.05% / 27.76%)
Short Range (<20Kb): 52,875  (24.13% / 24.77%)
Long Range (>20Kb): 6,394  (2.92% / 3.00%)