Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.14.1" 2022-02-08; /Data/Tools/juicer1.6_compact/scripts/juicer.sh -t 10 -D /Data/Tools/juicer1.6_compact -g hg19-pUC19 -z /Data/Tools/exoclasma/databases/hg19-pUC19/hg19-pUC19.fasta -p /Data/Tools/exoclasma/databases/hg19-pUC19/hg19-pUC19.chromsizes.txt -s NlaIII -y /Data/Tools/exoclasma/databases/hg19-pUC19/hg19-pUC19.restriction_sites.NlaIII.txt -d /Data/NGS_Data/2022-04-08-MySeq-Test/Results/62_1203_emptyNla                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  177,536
 Normal Paired: 172,615 (97.23%)
 Chimeric Paired: 2,076 (1.17%)
 Chimeric Ambiguous: 597 (0.34%)
 Unmapped: 2,248 (1.27%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 174,691 (98.40%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-04-19T14:27:30,169]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 173,787 (97.89%)
PCR Duplicates: 733 (0.41%)
Optical Duplicates: 171 (0.10%)
Library Complexity Estimate: 20,717,522
Intra-fragment Reads: 121,179 (68.26% / 69.73%)
Below MAPQ Threshold: 7,528 (4.24% / 4.33%)
Hi-C Contacts: 45,080 (25.39% / 25.94%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 56% - 44%
 Pair Type %(L-I-O-R): 24% - 24% - 27% - 26%
Inter-chromosomal: 491  (0.28% / 0.28%)
Intra-chromosomal: 44,589  (25.12% / 25.66%)
Short Range (<20Kb): 44,096  (24.84% / 25.37%)
Long Range (>20Kb): 493  (0.28% / 0.28%)