mkdir: cannot create directory ‘compartments_stat’: File exists

The following chromosome names did not match between the the bam files
chromosome	length
         mmchrM	     16299
mmchr1_GL456221_random	    206961
mmchrUn_GL456378	     31602
mmchrUn_GL456381	     25871
mmchrUn_GL456360	     31704
mmchrUn_GL456387	     24685
mmchrY_JH584301_random	    259875
 CMV_plasmidold	      3252
mmchr1_GL456210_random	    169725
        mmchr13	 120421639
mmchr4_JH584294_random	    191905
mmchrUn_GL456383	     38659
mmchrUn_GL456359	     22974
mmchrX_GL456233_random	    336933
mmchrUn_GL456239	     40056
mmchrUn_GL456389	     28772
mmchr5_GL456354_random	    195993
pUC19_NlaMut_full	      2680
         mmchr5	 151834684
mmchrUn_GL456370	     26764
         mmchrX	 171031299
mmchr4_JH584293_random	    207968
mmchr1_GL456212_random	    153618
mmchr5_JH584296_random	    199368
mmchrY_JH584300_random	    182347
        mmchr16	  98207768
        mmchr14	 124902244
mmchr5_JH584297_random	    205776
        mmchr11	 122082543
        mmchr10	 130694993
mmchr5_JH584298_random	    184189
mmchr4_JH584292_random	     14945
         mmchr1	 195471971
mmchrY_JH584302_random	    155838
mmchr7_GL456219_random	    175968
        mmchr19	  61431566
         mmchr2	 182113224
        mmchr15	 104043685
        mmchr17	  94987271
mmchrUn_GL456382	     23158
mmchrUn_GL456393	     55711
mmchrUn_GL456379	     72385
mmchr4_GL456350_random	    227966
         mmchr6	 149736546
mmchrUn_GL456396	     21240
         mmchr7	 145441459
mmchr4_GL456216_random	     66673
mmchrUn_GL456390	     24668
         mmchr8	 129401213
mmchrUn_JH584304	    114452
mmchr5_JH584299_random	    953012
mmchrUn_GL456385	     35240
         mmchrY	  91744698
mmchrUn_GL456394	     24323
mmchrUn_GL456366	     47073
        mmchr18	  90702639
mmchrUn_GL456392	     23629
         mmchr3	 160039680
mmchr1_GL456211_random	    241735
mmchrY_JH584303_random	    158099
mmchr4_JH584295_random	      1976
mmchrUn_GL456368	     20208
         mmchr9	 124595110
mmchr1_GL456213_random	     39340
mmchrUn_GL456367	     42057
         mmchr4	 156508116
mmchrUn_GL456372	     28664
        mmchr12	 120129022
*Warning*
The resulting bed file does not contain information for the chromosomes that were not common between the bigwig files
Number of bins found: 30894
Traceback (most recent call last):
  File "/mnt/storage/home/psbelokopytova/scratch/202208081122polya_data/4c_plasmid/calculate_reads_in_compartments.py", line 5, in <module>
    comp_e1 = pd.read_csv("/mnt/scratch/ws/psbelokopytova/202206141106Polina_data/4c_plasmid/compartments_stat/K562eigen_100Kb_modifyedByGC.bedGraph", sep="\t", names=["#'chr'", "'start'", "'end'", "e1"])
  File "/mnt/storage/home/psbelokopytova/.local/lib/python3.6/site-packages/pandas/io/parsers.py", line 676, in parser_f
    return _read(filepath_or_buffer, kwds)
  File "/mnt/storage/home/psbelokopytova/.local/lib/python3.6/site-packages/pandas/io/parsers.py", line 448, in _read
    parser = TextFileReader(fp_or_buf, **kwds)
  File "/mnt/storage/home/psbelokopytova/.local/lib/python3.6/site-packages/pandas/io/parsers.py", line 880, in __init__
    self._make_engine(self.engine)
  File "/mnt/storage/home/psbelokopytova/.local/lib/python3.6/site-packages/pandas/io/parsers.py", line 1114, in _make_engine
    self._engine = CParserWrapper(self.f, **self.options)
  File "/mnt/storage/home/psbelokopytova/.local/lib/python3.6/site-packages/pandas/io/parsers.py", line 1891, in __init__
    self._reader = parsers.TextReader(src, **kwds)
  File "pandas/_libs/parsers.pyx", line 374, in pandas._libs.parsers.TextReader.__cinit__
  File "pandas/_libs/parsers.pyx", line 674, in pandas._libs.parsers.TextReader._setup_parser_source
FileNotFoundError: [Errno 2] File /mnt/scratch/ws/psbelokopytova/202206141106Polina_data/4c_plasmid/compartments_stat/K562eigen_100Kb_modifyedByGC.bedGraph does not exist: '/mnt/scratch/ws/psbelokopytova/202206141106Polina_data/4c_plasmid/compartments_stat/K562eigen_100Kb_modifyedByGC.bedGraph'