WORK_DIR=/storage2/sasha_yan/2025-May-BGI/PCR-product
cd $WORK_DIR;
declare -a samples=("CMV-PCR-Nla_3" "CMV-PCR-Nla_Kl_1_L1" "CMV-PCR-Nla_Kl_2_L1" "CMV-PCR-Nla_Kl_3dtransf_4" "ench3-PCR-Dpn_3" "ench3-PCR-Dpn_Kl_1" "ench3-PCR-Dpn_Kl_2" "ench3-PCR-Dpn_Kl_3dtransf_4_L1")
for sample in "${samples[@]}"
do 
python3 /storage2/sasha_yan/2025-May-BGI/PCR-product/scripts/awk_merged.py $WORK_DIR/Hi-C_stats_probes/${sample}/aligned/merged_nodups.txt $WORK_DIR/Hi-C_stats_probes/awk_merged.txt
done