#PBS -q bl2x220g7q
#PBS -l select=1:ncpus=5:mem=10g
#PBS -l walltime=01:00:00
#PBS -l cput=01:00:00

WORK_DIR=/mnt/scratch/ws/psbelokopytova/202204191141Polya/4c_plasmid/
THR=5
source activate nn_Polina_tf2
~/insulatory_index/miniconda3/envs/aquas_chipseq/bin/multiBamSummary BED-file --outRawCounts $WORK_DIR/compartments_stat/result_BamSummary_onlyNlaIII_cut_TaiI_100Kb.txt --BED ~/scratch/202204191141Polya/4c_plasmid/compartments_stat/K562eigen_100Kb_modifyedByGC.bedGraph --bamfiles $WORK_DIR/2022-02-07/align/61/61_pr_plasmid1_cutTaiI.sorted.bam $WORK_DIR/2022-02-07/align/62/62_pr_plasmid1_cutTaiI.sorted.bam $WORK_DIR/2022-02-07/align/63/63_pr_plasmid1_cutTaiI.sorted.bam $WORK_DIR/2021-11-22/align/P4C5/P4C5_pr_plasmid1_cutTaiI.sorted.bam $WORK_DIR/2021-11-22/align/P4C25/P4C25_pr_plasmid1_cutTaiI.sorted.bam -o result_BamSummary_onlyNlaIII.tgz

