Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/Ano/Aqmac -p /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Aqmac_VARYA/Aqmac_V3R.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Aqmac_VARYA/Aqmac_V3R.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Aqmac_VARYA/Aqmac_V3R.fa -o /mnt/storage/home/manuriddinov/scratch/Anopheles_out/Aqmac_V3R -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  179,430,766
 Normal Paired: 59,634,269 (33.24%)
 Chimeric Paired: 82,812,927 (46.15%)
 Chimeric Ambiguous: 22,021,310 (12.27%)
 Unmapped: 14,962,260 (8.34%)
 Ligation Motif Present: 76,454,489 (42.61%)
Alignable (Normal+Chimeric Paired): 142,447,196 (79.39%)
Unique Reads: 117,613,895 (65.55%)
PCR Duplicates: 23,775,201 (13.25%)
Optical Duplicates: 1,058,100 (0.59%)
Library Complexity Estimate: 371,830,280
Intra-fragment Reads: 7,458,309 (4.16% / 6.34%)
Below MAPQ Threshold: 14,077,718 (7.85% / 11.97%)
Hi-C Contacts: 96,077,868 (53.55% / 81.69%)
 Ligation Motif Present: 27,363,789  (15.25% / 23.27%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 8,164,854  (4.55% / 6.94%)
Intra-chromosomal: 87,913,014  (49.00% / 74.75%)
Short Range (<20Kb): 37,982,611  (21.17% / 32.29%)
Long Range (>20Kb): 49,930,096  (27.83% / 42.45%)