Experiment description: Juicer version 1.5.6;9 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 9 -q 30 -d /mnt/storage/home/manuriddinov/scratch/fastq/Ano/Aqmc -n AqmcR2.12.full -p /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AqmcR2/AqmcR2.12.full.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AqmcR2/AqmcR2.12.full.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AqmcR2/AqmcR2.12.full.fa -o /mnt/storage/home/manuriddinov/scratch/Invertebrates/AqmcR2.12.full -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  179,430,766
 Normal Paired: 58,103,967 (32.38%)
 Chimeric Paired: 85,177,729 (47.47%)
 Chimeric Ambiguous: 21,641,995 (12.06%)
 Unmapped: 14,507,075 (8.09%)
 Ligation Motif Present: 76,454,489 (42.61%)
Alignable (Normal+Chimeric Paired): 143,281,696 (79.85%)
Unique Reads: 117,645,313 (65.57%)
PCR Duplicates: 24,580,496 (13.70%)
Optical Duplicates: 1,055,887 (0.59%)
Library Complexity Estimate: 362,551,414
Intra-fragment Reads: 7,065,069 (3.94% / 6.01%)
Below MAPQ Threshold: 23,008,584 (12.82% / 19.56%)
Hi-C Contacts: 87,571,660 (48.81% / 74.44%)
 Ligation Motif Present: 24,812,050  (13.83% / 21.09%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 9,287,527  (5.18% / 7.89%)
Intra-chromosomal: 78,284,133  (43.63% / 66.54%)
Short Range (<20Kb): 34,648,017  (19.31% / 29.45%)
Long Range (>20Kb): 43,635,838  (24.32% / 37.09%)