3-rd generation (ONT/PacBio) sequencing data and it’s processed derivatives for three Anopheles species.
*.total.sorted.bam (and *.bai) - alignment files (and index) for available 3-rd generation reads.
*.secondary.sorted.bam and *.bai - alignment files (and index) containing only those reads which have are split by aligner (i.e. which have supplementary alignment flag)
*.mapq1.merged.bed - bed file containing discontinuous genomic intervals covered by at least one read with mapq >= 1 (i.e. those intervals in the assembly are supported by 3-rd generation sequencing data)
*.mapq1.merged.bed - bed file containing discontinuous genomic intervals covered by at least one read with mapq >= 1 (i.e. those intervals in the assembly are supported by 3-rd generation sequencing data)
*.uncovered_junctions.bed - junctions between discontinuous genomic intervals covered by long reads, i.e. those junctions which are not directly supported by 3-rd generation sequencing data.
*.anchors.bed - long-range loops anchors