Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/Ano/AcolNg -p /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AcolNg_VARYA/AcolNg_V3.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AcolNg_VARYA/AcolNg_V3.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AcolNg_VARYA/AcolNg_V3.fa -o /mnt/storage/home/manuriddinov/scratch/Anopheles_out/AcolNg_V3 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  231,961,292
 Normal Paired: 108,826,067 (46.92%)
 Chimeric Paired: 81,994,702 (35.35%)
 Chimeric Ambiguous: 33,974,675 (14.65%)
 Unmapped: 7,165,848 (3.09%)
 Ligation Motif Present: 168,629,612 (72.70%)
Alignable (Normal+Chimeric Paired): 190,820,769 (82.26%)
Unique Reads: 165,637,626 (71.41%)
PCR Duplicates: 21,846,321 (9.42%)
Optical Duplicates: 3,336,822 (1.44%)
Library Complexity Estimate: 740,698,381
Intra-fragment Reads: 11,381,671 (4.91% / 6.87%)
Below MAPQ Threshold: 29,040,047 (12.52% / 17.53%)
Hi-C Contacts: 125,215,908 (53.98% / 75.60%)
 Ligation Motif Present: 61,809,999  (26.65% / 37.32%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 21,566,658  (9.30% / 13.02%)
Intra-chromosomal: 103,649,250  (44.68% / 62.58%)
Short Range (<20Kb): 29,262,843  (12.62% / 17.67%)
Long Range (>20Kb): 74,385,329  (32.07% / 44.91%)