Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/Ano/Agam -p /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Agam/AgamP4.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Agam/AgamP4.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Agam/AgamP4.fa -o /mnt/storage/home/manuriddinov/scratch/Anopheles_out/AgamP4 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  173,627,020
 Normal Paired: 138,157,423 (79.57%)
 Chimeric Paired: 3,966,166 (2.28%)
 Chimeric Ambiguous: 2,820,658 (1.62%)
 Unmapped: 28,682,773 (16.52%)
 Ligation Motif Present: 662,162 (0.38%)
Alignable (Normal+Chimeric Paired): 142,123,589 (81.86%)
Unique Reads: 84,683,139 (48.77%)
PCR Duplicates: 56,485,892 (32.53%)
Optical Duplicates: 954,558 (0.55%)
Library Complexity Estimate: 125,284,223
Intra-fragment Reads: 34,129,928 (19.66% / 40.30%)
Below MAPQ Threshold: 19,313,948 (11.12% / 22.81%)
Hi-C Contacts: 31,239,263 (17.99% / 36.89%)
 Ligation Motif Present: 339,643  (0.20% / 0.40%)
 3' Bias (Long Range): 40% - 60%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 2,218,604  (1.28% / 2.62%)
Intra-chromosomal: 29,020,659  (16.71% / 34.27%)
Short Range (<20Kb): 26,364,083  (15.18% / 31.13%)
Long Range (>20Kb): 2,656,544  (1.53% / 3.14%)