Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/Ano/Agam -p /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Agam/AgamP4.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Agam/AgamP4.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Agam/AgamP4.fa -o /mnt/storage/home/manuriddinov/scratch/Anopheles_out/AgamP4 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU Sequenced Read Pairs: 173,627,020 Normal Paired: 138,157,423 (79.57%) Chimeric Paired: 3,966,166 (2.28%) Chimeric Ambiguous: 2,820,658 (1.62%) Unmapped: 28,682,773 (16.52%) Ligation Motif Present: 662,162 (0.38%) Alignable (Normal+Chimeric Paired): 142,123,589 (81.86%) Unique Reads: 84,683,139 (48.77%) PCR Duplicates: 56,485,892 (32.53%) Optical Duplicates: 954,558 (0.55%) Library Complexity Estimate: 125,284,223 Intra-fragment Reads: 34,129,928 (19.66% / 40.30%) Below MAPQ Threshold: 23,456,629 (13.51% / 27.70%) Hi-C Contacts: 27,096,582 (15.61% / 32.00%) Ligation Motif Present: 318,432 (0.18% / 0.38%) 3' Bias (Long Range): 38% - 62% Pair Type %(L-I-O-R): 25% - 25% - 25% - 25% Inter-chromosomal: 943,151 (0.54% / 1.11%) Intra-chromosomal: 26,153,431 (15.06% / 30.88%) Short Range (<20Kb): 24,758,957 (14.26% / 29.24%) Long Range (>20Kb): 1,394,454 (0.80% / 1.65%)