Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/Ano/Agam -p /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Agam/AgamP4.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Agam/AgamP4.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Agam/AgamP4.fa -o /mnt/storage/home/manuriddinov/scratch/Anopheles_out/AgamP4 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  173,627,020
 Normal Paired: 138,157,423 (79.57%)
 Chimeric Paired: 3,966,166 (2.28%)
 Chimeric Ambiguous: 2,820,658 (1.62%)
 Unmapped: 28,682,773 (16.52%)
 Ligation Motif Present: 662,162 (0.38%)
Alignable (Normal+Chimeric Paired): 142,123,589 (81.86%)
Unique Reads: 84,683,139 (48.77%)
PCR Duplicates: 56,485,892 (32.53%)
Optical Duplicates: 954,558 (0.55%)
Library Complexity Estimate: 125,284,223
Intra-fragment Reads: 34,129,928 (19.66% / 40.30%)
Below MAPQ Threshold: 23,456,629 (13.51% / 27.70%)
Hi-C Contacts: 27,096,582 (15.61% / 32.00%)
 Ligation Motif Present: 318,432  (0.18% / 0.38%)
 3' Bias (Long Range): 38% - 62%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 943,151  (0.54% / 1.11%)
Intra-chromosomal: 26,153,431  (15.06% / 30.88%)
Short Range (<20Kb): 24,758,957  (14.26% / 29.24%)
Long Range (>20Kb): 1,394,454  (0.80% / 1.65%)