Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/Ano/AmerR4 -p /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AmerR4_VARYA/AmerR4_V3.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AmerR4_VARYA/AmerR4_V3.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AmerR4_VARYA/AmerR4_V3.fa -o /mnt/storage/home/manuriddinov/scratch/Anopheles_out/AmerR4_V3 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  188,700,705
 Normal Paired: 78,420,401 (41.56%)
 Chimeric Paired: 53,989,004 (28.61%)
 Chimeric Ambiguous: 16,609,540 (8.80%)
 Unmapped: 39,681,760 (21.03%)
 Ligation Motif Present: 125,132,781 (66.31%)
Alignable (Normal+Chimeric Paired): 132,409,405 (70.17%)
Unique Reads: 114,668,816 (60.77%)
PCR Duplicates: 15,999,379 (8.48%)
Optical Duplicates: 1,741,210 (0.92%)
Library Complexity Estimate: 489,080,571
Intra-fragment Reads: 5,708,656 (3.03% / 4.98%)
Below MAPQ Threshold: 28,333,876 (15.02% / 24.71%)
Hi-C Contacts: 80,626,284 (42.73% / 70.31%)
 Ligation Motif Present: 37,625,461  (19.94% / 32.81%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 26,572,896  (14.08% / 23.17%)
Intra-chromosomal: 54,053,388  (28.65% / 47.14%)
Short Range (<20Kb): 12,466,825  (6.61% / 10.87%)
Long Range (>20Kb): 41,586,065  (22.04% / 36.27%)