for i in {3,4,6}; do f=17104FL-17-04-0$i*; r1=$f/*R1*; r2=$f/*R2*; out=9p_$i.bam; echo $out; bwa mem -t 4 ~/hg38/hg38.fa $r1 $r2 | ~/samtools-1.16.1/samtools view -b -h - | samtools sort -o $out; done
