Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 2 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-22_BGI/7407_contr -s DpnII -y /data/nyt/Databases/hg38/GRCh38_no_alt_analysis_set_GCA_000001405.15_DpnII.txt -p /data/nyt/Databases/hg38/GRCh38_no_alt_analysis_set_GCA_000001405.15.fasta.chromsizes -z /data/nyt/Databases/hg38/GRCh38_no_alt_analysis_set_GCA_000001405.15.fasta -D /data/nyt/MMO/Tools/juicer1.6_compact -t 2                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  60,064
 Normal Paired: 24,714 (41.15%)
 Chimeric Paired: 26,398 (43.95%)
 Chimeric Ambiguous: 8,843 (14.72%)
 Unmapped: 109 (0.18%)
 Ligation Motif Present: 49,779 (82.88%)
Alignable (Normal+Chimeric Paired): 51,112 (85.10%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-26T07:42:09,209]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 50,643 (84.32%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 469 (0.78%)
Library Complexity Estimate: 0
Intra-fragment Reads: 4,780 (7.96% / 9.44%)
Below MAPQ Threshold: 5,059 (8.42% / 9.99%)
Hi-C Contacts: 40,804 (67.93% / 80.57%)
 Ligation Motif Present: 36,318  (60.47% / 71.71%)
 3' Bias (Long Range): 85% - 15%
 Pair Type intra chrom %(L-I-O-R): 10% - 72% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 24%
 DE: 43%
 Cis/all (FF and RR orient): 45.6%
Inter-chromosomal: 12,809  (21.33% / 25.29%)
Intra-chromosomal: 27,995  (46.61% / 55.28%)
Short Range (<20,000bp): 19,616  (32.66% / 38.73%)
Long Range (>20,000bp): 8,379  (13.95% / 16.55%)