Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 2 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-22_BGI/7407_contr -s DpnII -y /data/nyt/Databases/hg38/GRCh38_no_alt_analysis_set_GCA_000001405.15_DpnII.txt -p /data/nyt/Databases/hg38/GRCh38_no_alt_analysis_set_GCA_000001405.15.fasta.chromsizes -z /data/nyt/Databases/hg38/GRCh38_no_alt_analysis_set_GCA_000001405.15.fasta -D /data/nyt/MMO/Tools/juicer1.6_compact -t 2 Sequenced Read Pairs: 60,064 Normal Paired: 24,714 (41.15%) Chimeric Paired: 26,398 (43.95%) Chimeric Ambiguous: 8,843 (14.72%) Unmapped: 109 (0.18%) Ligation Motif Present: 49,779 (82.88%) Alignable (Normal+Chimeric Paired): 51,112 (85.10%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2023-12-26T07:42:09,209] [Globals.java:138] [main] Development mode is enabled Unique Reads: 50,643 (84.32%) PCR Duplicates: 0 (0.00%) Optical Duplicates: 469 (0.78%) Library Complexity Estimate: 0 Intra-fragment Reads: 4,780 (7.96% / 9.44%) Below MAPQ Threshold: 5,059 (8.42% / 9.99%) Hi-C Contacts: 40,804 (67.93% / 80.57%) Ligation Motif Present: 36,318 (60.47% / 71.71%) 3' Bias (Long Range): 85% - 15% Pair Type intra chrom %(L-I-O-R): 10% - 72% - 9% - 9% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 24% DE: 43% Cis/all (FF and RR orient): 45.6% Inter-chromosomal: 12,809 (21.33% / 25.29%) Intra-chromosomal: 27,995 (46.61% / 55.28%) Short Range (<20,000bp): 19,616 (32.66% / 38.73%) Long Range (>20,000bp): 8,379 (13.95% / 16.55%)