Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /data/nyt/Projects/Juicer-Out/2024_05_29_ENC/Hepatocytes/74C -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  179,533
 Normal Paired: 114,070 (63.54%)
 Chimeric Paired: 49,724 (27.70%)
 Chimeric Ambiguous: 12,044 (6.71%)
 Unmapped: 3,695 (2.06%)
 Ligation Motif Present: 107,660 (59.97%)
Alignable (Normal+Chimeric Paired): 163,794 (91.23%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-05-30T12:30:16,021]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 141,049 (78.56%)
PCR Duplicates: 21,518 (11.99%)
Optical Duplicates: 1,227 (0.68%)
Library Complexity Estimate: 558,614
Intra-fragment Reads: 15,745 (8.77% / 11.16%)
Below MAPQ Threshold: 24,353 (13.56% / 17.27%)
Hi-C Contacts: 116,696 (65.00% / 82.73%)
 Ligation Motif Present: 64,772  (36.08% / 45.92%)
 3' Bias (Long Range): 67% - 33%
 Pair Type intra chrom %(L-I-O-R): 3% - 91% - 3% - 3%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 68%
 Cis/all (FF and RR orient): 27.5%
Inter-chromosomal: 26,767  (14.91% / 18.98%)
Intra-chromosomal: 89,929  (50.09% / 63.76%)
Short Range (<20,000bp): 84,498  (47.07% / 59.91%)
Long Range (>20,000bp): 5,431  (3.03% / 3.85%)