Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 14 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /beegfs/scratch/ws/ws1/torgunakov-workoct/Juicer-Out/2024-11-13_ENC/Hepatocytes/74C_R2 -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/hgT2T.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 14                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  30,921,362
 Normal Paired: 22,946,726 (74.21%)
 Chimeric Paired: 5,186,053 (16.77%)
 Chimeric Ambiguous: 2,288,405 (7.40%)
 Unmapped: 500,178 (1.62%)
 Ligation Motif Present: 14,813,306 (47.91%)
Alignable (Normal+Chimeric Paired): 28,132,779 (90.98%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-12-03T17:33:23,542]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 25,749,564 (83.27%)
PCR Duplicates: 2,273,129 (7.35%)
Optical Duplicates: 110,086 (0.36%)
Library Complexity Estimate: 163,256,199
Intra-fragment Reads: 2,083,508 (6.74% / 8.09%)
Below MAPQ Threshold: 3,402,648 (11.00% / 13.21%)
Hi-C Contacts: 22,346,916 (72.27% / 86.79%)
 Ligation Motif Present: 9,933,226  (32.12% / 38.58%)
 3' Bias (Long Range): 64% - 36%
 Pair Type intra chrom %(L-I-O-R): 15% - 56% - 15% - 15%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 32%
 Cis/all (FF and RR orient): 64.4%
Inter-chromosomal: 5,441,282  (17.60% / 21.13%)
Intra-chromosomal: 16,905,634  (54.67% / 65.65%)
Short Range (<20,000bp): 10,022,723  (32.41% / 38.92%)
Long Range (>20,000bp): 6,882,911  (22.26% / 26.73%)