Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 14 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /beegfs/scratch/ws/ws1/torgunakov-workoct/Juicer-Out/2024-11-13_ENC/Hepatocytes/74C_R2 -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/hgT2T.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 14                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  30,921,362
 Normal Paired: 22,946,726 (74.21%)
 Chimeric Paired: 5,186,053 (16.77%)
 Chimeric Ambiguous: 2,288,405 (7.40%)
 Unmapped: 500,178 (1.62%)
 Ligation Motif Present: 14,813,306 (47.91%)
Alignable (Normal+Chimeric Paired): 28,132,779 (90.98%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-12-03T17:33:23,542]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 25,749,564 (83.27%)
PCR Duplicates: 2,273,129 (7.35%)
Optical Duplicates: 110,086 (0.36%)
Library Complexity Estimate: 163,256,199
Intra-fragment Reads: 2,083,508 (6.74% / 8.09%)
Below MAPQ Threshold: 4,969,045 (16.07% / 19.30%)
Hi-C Contacts: 20,780,519 (67.20% / 80.70%)
 Ligation Motif Present: 9,093,904  (29.41% / 35.32%)
 3' Bias (Long Range): 64% - 36%
 Pair Type intra chrom %(L-I-O-R): 14% - 56% - 15% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 33%
 Cis/all (FF and RR orient): 65.2%
Inter-chromosomal: 4,882,037  (15.79% / 18.96%)
Intra-chromosomal: 15,898,482  (51.42% / 61.74%)
Short Range (<20,000bp): 9,533,954  (30.83% / 37.03%)
Long Range (>20,000bp): 6,364,528  (20.58% / 24.72%)