Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.12" 2024-07-16; juicer.sh -g T2T -d /storage3/artem/MG_190924/74C_R3 -s DpnII -p /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -y /storage3/artem/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -z /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.fa -t 10 -D /storage2/dreamworld/Tools/juicer1.6_compact/                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  11,462
 Normal Paired: 7,203 (62.84%)
 Chimeric Paired: 2,689 (23.46%)
 Chimeric Ambiguous: 1,478 (12.89%)
 Unmapped: 92 (0.80%)
 Ligation Motif Present: 5,477 (47.78%)
Alignable (Normal+Chimeric Paired): 9,892 (86.30%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-19T16:30:40,860]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 9,883 (86.22%)
PCR Duplicates: 2 (0.02%)
Optical Duplicates: 7 (0.06%)
Library Complexity Estimate: 24,425,011
Intra-fragment Reads: 837 (7.30% / 8.47%)
Below MAPQ Threshold: 1,412 (12.32% / 14.29%)
Hi-C Contacts: 8,471 (73.91% / 85.71%)
 Ligation Motif Present: 3,465  (30.23% / 35.06%)
 3' Bias (Long Range): 54% - 46%
 Pair Type intra chrom %(L-I-O-R): 14% - 55% - 15% - 16%
 Pair Type inter chrom %(L-I-O-R): 25% - 26% - 23% - 25%
 DE: 30%
 Cis/all (FF and RR orient): 63.3%
Inter-chromosomal: 2,158  (18.83% / 21.84%)
Intra-chromosomal: 6,313  (55.08% / 63.88%)
Short Range (<20,000bp): 3,365  (29.36% / 34.05%)
Long Range (>20,000bp): 2,948  (25.72% / 29.83%)