Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 32 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /beegfs/scratch/ws/ws1/torgunakov-workoct/Juicer-Out/2024-11-13_ENC/Hepatocytes/74T_R2 -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/hgT2T.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 32                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  32,671,044
 Normal Paired: 24,458,275 (74.86%)
 Chimeric Paired: 4,601,656 (14.08%)
 Chimeric Ambiguous: 2,927,072 (8.96%)
 Unmapped: 684,041 (2.09%)
 Ligation Motif Present: 14,659,875 (44.87%)
Alignable (Normal+Chimeric Paired): 29,059,931 (88.95%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-12-03T19:33:09,049]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 27,122,839 (83.02%)
PCR Duplicates: 1,825,484 (5.59%)
Optical Duplicates: 111,608 (0.34%)
Library Complexity Estimate: 219,775,231
Intra-fragment Reads: 2,164,011 (6.62% / 7.98%)
Below MAPQ Threshold: 5,426,479 (16.61% / 20.01%)
Hi-C Contacts: 21,696,360 (66.41% / 79.99%)
 Ligation Motif Present: 8,671,829  (26.54% / 31.97%)
 3' Bias (Long Range): 62% - 38%
 Pair Type intra chrom %(L-I-O-R): 16% - 53% - 16% - 16%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 27%
 Cis/all (FF and RR orient): 62.2%
Inter-chromosomal: 5,960,208  (18.24% / 21.97%)
Intra-chromosomal: 15,736,152  (48.17% / 58.02%)
Short Range (<20,000bp): 7,983,033  (24.43% / 29.43%)
Long Range (>20,000bp): 7,753,119  (23.73% / 28.59%)