Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 14 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /beegfs/scratch/ws/ws1/torgunakov-workoct/Juicer-Out/2024-11-13_ENC/Hepatocytes/74T_R3 -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/hgT2T.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 14                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  7,176,801
 Normal Paired: 5,719,545 (79.69%)
 Chimeric Paired: 582,825 (8.12%)
 Chimeric Ambiguous: 534,500 (7.45%)
 Unmapped: 339,931 (4.74%)
 Ligation Motif Present: 2,171,010 (30.25%)
Alignable (Normal+Chimeric Paired): 6,302,370 (87.82%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-12-03T16:38:52,201]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 5,915,621 (82.43%)
PCR Duplicates: 364,137 (5.07%)
Optical Duplicates: 22,612 (0.32%)
Library Complexity Estimate: 52,034,937
Intra-fragment Reads: 388,070 (5.41% / 6.56%)
Below MAPQ Threshold: 860,658 (11.99% / 14.55%)
Hi-C Contacts: 5,054,963 (70.43% / 85.45%)
 Ligation Motif Present: 1,314,023  (18.31% / 22.21%)
 3' Bias (Long Range): 53% - 47%
 Pair Type intra chrom %(L-I-O-R): 17% - 49% - 17% - 17%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 21%
 Cis/all (FF and RR orient): 59.0%
Inter-chromosomal: 1,628,977  (22.70% / 27.54%)
Intra-chromosomal: 3,425,986  (47.74% / 57.91%)
Short Range (<20,000bp): 1,481,313  (20.64% / 25.04%)
Long Range (>20,000bp): 1,944,673  (27.10% / 32.87%)