Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.12" 2024-07-16; juicer.sh -g T2T -d /storage3/artem/MG_190924/87C_R5 -s DpnII -p /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -y /storage3/artem/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -z /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.fa -t 10 -D /storage2/dreamworld/Tools/juicer1.6_compact/                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  17,084
 Normal Paired: 10,590 (61.99%)
 Chimeric Paired: 3,938 (23.05%)
 Chimeric Ambiguous: 2,438 (14.27%)
 Unmapped: 118 (0.69%)
 Ligation Motif Present: 8,385 (49.08%)
Alignable (Normal+Chimeric Paired): 14,528 (85.04%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-19T16:29:40,150]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 14,515 (84.96%)
PCR Duplicates: 2 (0.01%)
Optical Duplicates: 11 (0.06%)
Library Complexity Estimate: 52,680,983
Intra-fragment Reads: 1,320 (7.73% / 9.09%)
Below MAPQ Threshold: 2,202 (12.89% / 15.17%)
Hi-C Contacts: 12,313 (72.07% / 84.83%)
 Ligation Motif Present: 5,109  (29.91% / 35.20%)
 3' Bias (Long Range): 54% - 46%
 Pair Type intra chrom %(L-I-O-R): 15% - 58% - 14% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 26% - 26% - 24%
 DE: 32%
 Cis/all (FF and RR orient): 61.8%
Inter-chromosomal: 3,244  (18.99% / 22.35%)
Intra-chromosomal: 9,069  (53.08% / 62.48%)
Short Range (<20,000bp): 4,656  (27.25% / 32.08%)
Long Range (>20,000bp): 4,413  (25.83% / 30.40%)