Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 32 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /beegfs/scratch/ws/ws1/torgunakov-workoct/Juicer-Out/2024-11-13_ENC/Hepatocytes/87C_R5 -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/hgT2T.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 32                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  9,810,404
 Normal Paired: 7,882,606 (80.35%)
 Chimeric Paired: 910,186 (9.28%)
 Chimeric Ambiguous: 730,562 (7.45%)
 Unmapped: 287,050 (2.93%)
 Ligation Motif Present: 3,188,154 (32.50%)
Alignable (Normal+Chimeric Paired): 8,792,792 (89.63%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-12-03T19:00:00,759]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 8,322,069 (84.83%)
PCR Duplicates: 440,304 (4.49%)
Optical Duplicates: 30,419 (0.31%)
Library Complexity Estimate: 84,242,898
Intra-fragment Reads: 669,087 (6.82% / 8.04%)
Below MAPQ Threshold: 1,724,132 (17.57% / 20.72%)
Hi-C Contacts: 6,597,937 (67.25% / 79.28%)
 Ligation Motif Present: 1,800,809  (18.36% / 21.64%)
 3' Bias (Long Range): 54% - 46%
 Pair Type intra chrom %(L-I-O-R): 16% - 53% - 16% - 16%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 26%
 Cis/all (FF and RR orient): 61.3%
Inter-chromosomal: 1,883,793  (19.20% / 22.64%)
Intra-chromosomal: 4,714,144  (48.05% / 56.65%)
Short Range (<20,000bp): 2,154,424  (21.96% / 25.89%)
Long Range (>20,000bp): 2,559,720  (26.09% / 30.76%)