Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.11" 2024-04-16; juicer.sh -g T2T -d /storage3/artem/87T_R2 -s DpnII -p /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -y /storage3/artem/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -z /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.fa -t 10 -D /storage2/dreamworld/Tools/juicer1.6_compact/                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  404,237
 Normal Paired: 247,683 (61.27%)
 Chimeric Paired: 112,838 (27.91%)
 Chimeric Ambiguous: 30,332 (7.50%)
 Unmapped: 13,384 (3.31%)
 Ligation Motif Present: 188,283 (46.58%)
Alignable (Normal+Chimeric Paired): 360,521 (89.19%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-06-18T00:27:52,000]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 356,863 (88.28%)
PCR Duplicates: 3,580 (0.89%)
Optical Duplicates: 78 (0.02%)
Library Complexity Estimate: 18,024,785
Intra-fragment Reads: 82,175 (20.33% / 23.03%)
Below MAPQ Threshold: 57,140 (14.14% / 16.01%)
Hi-C Contacts: 299,723 (74.15% / 83.99%)
 Ligation Motif Present: 128,678  (31.83% / 36.06%)
 3' Bias (Long Range): 63% - 37%
 Pair Type intra chrom %(L-I-O-R): 2% - 91% - 5% - 2%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 68%
 Cis/all (FF and RR orient): 16.4%
Inter-chromosomal: 80,488  (19.91% / 22.55%)
Intra-chromosomal: 219,235  (54.23% / 61.43%)
Short Range (<20,000bp): 214,681  (53.11% / 60.16%)
Long Range (>20,000bp): 4,554  (1.13% / 1.28%)