Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 32 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /beegfs/scratch/ws/ws1/torgunakov-workoct/Juicer-Out/2024-11-13_ENC/Hepatocytes/87T_R5 -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/hgT2T.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 32                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  20,237,537
 Normal Paired: 15,274,535 (75.48%)
 Chimeric Paired: 2,674,386 (13.21%)
 Chimeric Ambiguous: 1,835,454 (9.07%)
 Unmapped: 453,162 (2.24%)
 Ligation Motif Present: 9,645,294 (47.66%)
Alignable (Normal+Chimeric Paired): 17,948,921 (88.69%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-12-03T19:11:03,992]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 16,872,358 (83.37%)
PCR Duplicates: 1,008,639 (4.98%)
Optical Duplicates: 67,924 (0.34%)
Library Complexity Estimate: 152,477,662
Intra-fragment Reads: 1,076,612 (5.32% / 6.38%)
Below MAPQ Threshold: 3,330,357 (16.46% / 19.74%)
Hi-C Contacts: 13,542,001 (66.92% / 80.26%)
 Ligation Motif Present: 5,721,156  (28.27% / 33.91%)
 3' Bias (Long Range): 61% - 39%
 Pair Type intra chrom %(L-I-O-R): 16% - 52% - 16% - 16%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 27%
 Cis/all (FF and RR orient): 66.8%
Inter-chromosomal: 3,270,503  (16.16% / 19.38%)
Intra-chromosomal: 10,271,498  (50.75% / 60.88%)
Short Range (<20,000bp): 4,837,400  (23.90% / 28.67%)
Long Range (>20,000bp): 5,434,098  (26.85% / 32.21%)