Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 2 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-22_BGI/7407_treated -s DpnII -y /data/nyt/Databases/hg38/GRCh38_no_alt_analysis_set_GCA_000001405.15_DpnII.txt -p /data/nyt/Databases/hg38/GRCh38_no_alt_analysis_set_GCA_000001405.15.fasta.chromsizes -z /data/nyt/Databases/hg38/GRCh38_no_alt_analysis_set_GCA_000001405.15.fasta -D /data/nyt/MMO/Tools/juicer1.6_compact -t 2                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  52,891
 Normal Paired: 24,564 (46.44%)
 Chimeric Paired: 22,452 (42.45%)
 Chimeric Ambiguous: 5,748 (10.87%)
 Unmapped: 127 (0.24%)
 Ligation Motif Present: 42,041 (79.49%)
Alignable (Normal+Chimeric Paired): 47,016 (88.89%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-26T07:43:16,773]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 46,514 (87.94%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 502 (0.95%)
Library Complexity Estimate: 0
Intra-fragment Reads: 5,131 (9.70% / 11.03%)
Below MAPQ Threshold: 7,488 (14.16% / 16.10%)
Hi-C Contacts: 33,895 (64.08% / 72.87%)
 Ligation Motif Present: 29,785  (56.31% / 64.03%)
 3' Bias (Long Range): 85% - 15%
 Pair Type intra chrom %(L-I-O-R): 9% - 72% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 47%
 Cis/all (FF and RR orient): 52.2%
Inter-chromosomal: 8,610  (16.28% / 18.51%)
Intra-chromosomal: 25,285  (47.81% / 54.36%)
Short Range (<20,000bp): 18,181  (34.37% / 39.09%)
Long Range (>20,000bp): 7,104  (13.43% / 15.27%)