Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 14 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /beegfs/scratch/ws/ws1/torgunakov-workoct/Juicer-Out/2024-11-13_ENC/Hepatocytes/74C_R3 -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/hgT2T.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 14                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  14,667,140
 Normal Paired: 11,662,330 (79.51%)
 Chimeric Paired: 1,292,414 (8.81%)
 Chimeric Ambiguous: 967,854 (6.60%)
 Unmapped: 744,542 (5.08%)
 Ligation Motif Present: 4,447,336 (30.32%)
Alignable (Normal+Chimeric Paired): 12,954,744 (88.32%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-12-03T16:55:36,318]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 11,806,668 (80.50%)
PCR Duplicates: 1,098,872 (7.49%)
Optical Duplicates: 49,204 (0.34%)
Library Complexity Estimate: 71,417,769
Intra-fragment Reads: 799,372 (5.45% / 6.77%)
Below MAPQ Threshold: 2,419,625 (16.50% / 20.49%)
Hi-C Contacts: 9,387,043 (64.00% / 79.51%)
 Ligation Motif Present: 2,437,864  (16.62% / 20.65%)
 3' Bias (Long Range): 53% - 47%
 Pair Type intra chrom %(L-I-O-R): 17% - 50% - 17% - 16%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 25%
 Cis/all (FF and RR orient): 65.1%
Inter-chromosomal: 2,452,392  (16.72% / 20.77%)
Intra-chromosomal: 6,934,651  (47.28% / 58.74%)
Short Range (<20,000bp): 3,338,549  (22.76% / 28.28%)
Long Range (>20,000bp): 3,596,102  (24.52% / 30.46%)