Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.12" 2024-07-16; juicer.sh -g T2T -d /storage3/artem/MG_190924/74T_R3 -s DpnII -p /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -y /storage3/artem/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -z /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.fa -t 10 -D /storage2/dreamworld/Tools/juicer1.6_compact/                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  7,181
 Normal Paired: 4,456 (62.05%)
 Chimeric Paired: 1,576 (21.95%)
 Chimeric Ambiguous: 1,083 (15.08%)
 Unmapped: 66 (0.92%)
 Ligation Motif Present: 3,485 (48.53%)
Alignable (Normal+Chimeric Paired): 6,032 (84.00%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-19T16:31:32,454]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 6,026 (83.92%)
PCR Duplicates: 1 (0.01%)
Optical Duplicates: 5 (0.07%)
Library Complexity Estimate: 18,160,355
Intra-fragment Reads: 470 (6.55% / 7.80%)
Below MAPQ Threshold: 894 (12.45% / 14.84%)
Hi-C Contacts: 5,132 (71.47% / 85.16%)
 Ligation Motif Present: 2,085  (29.03% / 34.60%)
 3' Bias (Long Range): 53% - 47%
 Pair Type intra chrom %(L-I-O-R): 15% - 54% - 15% - 15%
 Pair Type inter chrom %(L-I-O-R): 26% - 25% - 25% - 24%
 DE: 27%
 Cis/all (FF and RR orient): 59.1%
Inter-chromosomal: 1,534  (21.36% / 25.46%)
Intra-chromosomal: 3,598  (50.10% / 59.71%)
Short Range (<20,000bp): 1,794  (24.98% / 29.77%)
Long Range (>20,000bp): 1,804  (25.12% / 29.94%)