Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /data/nyt/Projects/Juicer-Out/2024_05_29_ENC/Hepatocytes/74T -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  208,191
 Normal Paired: 111,113 (53.37%)
 Chimeric Paired: 75,291 (36.16%)
 Chimeric Ambiguous: 17,675 (8.49%)
 Unmapped: 4,112 (1.98%)
 Ligation Motif Present: 145,125 (69.71%)
Alignable (Normal+Chimeric Paired): 186,404 (89.54%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-05-30T12:31:16,556]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 154,941 (74.42%)
PCR Duplicates: 29,745 (14.29%)
Optical Duplicates: 1,718 (0.83%)
Library Complexity Estimate: 509,981
Intra-fragment Reads: 20,287 (9.74% / 13.09%)
Below MAPQ Threshold: 27,662 (13.29% / 17.85%)
Hi-C Contacts: 127,279 (61.14% / 82.15%)
 Ligation Motif Present: 84,627  (40.65% / 54.62%)
 3' Bias (Long Range): 76% - 24%
 Pair Type intra chrom %(L-I-O-R): 3% - 89% - 4% - 3%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 57%
 Cis/all (FF and RR orient): 20.3%
Inter-chromosomal: 43,914  (21.09% / 28.34%)
Intra-chromosomal: 83,365  (40.04% / 53.80%)
Short Range (<20,000bp): 76,544  (36.77% / 49.40%)
Long Range (>20,000bp): 6,821  (3.28% / 4.40%)