Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /data/nyt/Projects/Juicer-Out/2024_05_29_ENC/Hepatocytes/87C -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  477,292
 Normal Paired: 260,208 (54.52%)
 Chimeric Paired: 159,617 (33.44%)
 Chimeric Ambiguous: 49,381 (10.35%)
 Unmapped: 8,086 (1.69%)
 Ligation Motif Present: 331,630 (69.48%)
Alignable (Normal+Chimeric Paired): 419,825 (87.96%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-05-30T12:33:19,435]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 358,012 (75.01%)
PCR Duplicates: 58,416 (12.24%)
Optical Duplicates: 3,397 (0.71%)
Library Complexity Estimate: 1,341,964
Intra-fragment Reads: 53,539 (11.22% / 14.95%)
Below MAPQ Threshold: 70,749 (14.82% / 19.76%)
Hi-C Contacts: 287,263 (60.19% / 80.24%)
 Ligation Motif Present: 187,034  (39.19% / 52.24%)
 3' Bias (Long Range): 74% - 26%
 Pair Type intra chrom %(L-I-O-R): 7% - 79% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 62%
 Cis/all (FF and RR orient): 60.3%
Inter-chromosomal: 43,949  (9.21% / 12.28%)
Intra-chromosomal: 243,314  (50.98% / 67.96%)
Short Range (<20,000bp): 187,167  (39.21% / 52.28%)
Long Range (>20,000bp): 56,147  (11.76% / 15.68%)