Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.12" 2024-07-16; juicer.sh -g T2T -d /storage3/artem/MG_190924/87T_R5 -s DpnII -p /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -y /storage3/artem/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -z /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.fa -t 10 -D /storage2/dreamworld/Tools/juicer1.6_compact/                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  34,858
 Normal Paired: 19,252 (55.23%)
 Chimeric Paired: 9,863 (28.29%)
 Chimeric Ambiguous: 5,503 (15.79%)
 Unmapped: 240 (0.69%)
 Ligation Motif Present: 22,182 (63.64%)
Alignable (Normal+Chimeric Paired): 29,115 (83.52%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-19T16:28:25,659]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 29,086 (83.44%)
PCR Duplicates: 3 (0.01%)
Optical Duplicates: 26 (0.07%)
Library Complexity Estimate: 141,018,623
Intra-fragment Reads: 2,234 (6.41% / 7.68%)
Below MAPQ Threshold: 4,345 (12.46% / 14.94%)
Hi-C Contacts: 24,741 (70.98% / 85.06%)
 Ligation Motif Present: 14,142  (40.57% / 48.62%)
 3' Bias (Long Range): 62% - 38%
 Pair Type intra chrom %(L-I-O-R): 15% - 56% - 14% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 24% - 26%
 DE: 32%
 Cis/all (FF and RR orient): 66.3%
Inter-chromosomal: 5,631  (16.15% / 19.36%)
Intra-chromosomal: 19,110  (54.82% / 65.70%)
Short Range (<20,000bp): 9,848  (28.25% / 33.86%)
Long Range (>20,000bp): 9,262  (26.57% / 31.84%)