Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /data/nyt/Projects/Juicer-Out/2024_05_29_ENC/Hepatocytes/87T -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  220,511
 Normal Paired: 128,300 (58.18%)
 Chimeric Paired: 69,185 (31.37%)
 Chimeric Ambiguous: 19,583 (8.88%)
 Unmapped: 3,443 (1.56%)
 Ligation Motif Present: 112,161 (50.86%)
Alignable (Normal+Chimeric Paired): 197,485 (89.56%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-05-30T12:34:35,362]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 166,825 (75.65%)
PCR Duplicates: 28,899 (13.11%)
Optical Duplicates: 1,761 (0.80%)
Library Complexity Estimate: 595,801
Intra-fragment Reads: 46,068 (20.89% / 27.61%)
Below MAPQ Threshold: 28,325 (12.85% / 16.98%)
Hi-C Contacts: 138,500 (62.81% / 83.02%)
 Ligation Motif Present: 64,565  (29.28% / 38.70%)
 3' Bias (Long Range): 67% - 33%
 Pair Type intra chrom %(L-I-O-R): 6% - 83% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 63%
 Cis/all (FF and RR orient): 51.4%
Inter-chromosomal: 24,647  (11.18% / 14.77%)
Intra-chromosomal: 113,853  (51.63% / 68.25%)
Short Range (<20,000bp): 91,983  (41.71% / 55.14%)
Long Range (>20,000bp): 21,870  (9.92% / 13.11%)