Experiment description: Juicer version 1.5.6;22 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 22 -d /mnt/storage/home/manuriddinov/scratch/fastq/NB/MMC2 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/chr/hg38/hg38.chr.sizes -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/chr/hg38/hg38.fa -s none -q 30 -n MMC2 -l 1000000,500000,250000,100000,50000,25000,10000,5000,1000 -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/NB/MMC2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  61,298
 Normal Paired: 42,451,047 (69253.56%)
 Chimeric Paired: 10,328,319 (16849.36%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 49,651,635 (81000.42%)
 Ligation Motif Present: 102,492,299 (167203.33%)
Alignable (Normal+Chimeric Paired): 52,779,366 (86102.92%)
Unique Reads: 88,290,133 (144,034.28%)
PCR Duplicates: 1,026,737 (1,674.99%)
Optical Duplicates: 2,785,812 (4,544.70%)
Library Complexity Estimate: 3,855,051,871
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 7,763,130 (12664.57% / 8.79%)
Hi-C Contacts: 80,527,003 (131369.71% / 91.21%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 13% - 62% - 13% - 13%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 42%
 Cis/all (FF and RR orient): 73.6%
Inter-chromosomal: 12,234,133  (19958.45% / 13.86%)
Intra-chromosomal: 68,292,870  (111411.25% / 77.35%)
Short Range (<20,000bp): 40,582,201  (66204.77% / 45.96%)
Long Range (>20,000bp): 27,710,669  (45206.48% / 31.39%)