Experiment description: Juicer version 1.5.6;22 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 22 -d /mnt/storage/home/manuriddinov/scratch/fastq/NB/MMC_aux -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/chr/hg38/hg38.chr.sizes -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/chr/hg38/hg38.fa -s none -q 30 -n MMC_aux -l 1000000,500000,250000,100000,50000,25000,10000,5000,1000 -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/NB/MMC_aux -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  69,587
 Normal Paired: 37,478,202 (53858.05%)
 Chimeric Paired: 8,868,048 (12743.83%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 54,430,916 (78219.95%)
 Ligation Motif Present: 100,846,753 (144921.83%)
Alignable (Normal+Chimeric Paired): 46,346,250 (66601.88%)
Unique Reads: 86,716,374 (124,615.77%)
PCR Duplicates: 1,811,514 (2,603.24%)
Optical Duplicates: 3,381,230 (4,859.00%)
Library Complexity Estimate: 2,133,548,317
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 7,458,662 (10718.47% / 8.60%)
Hi-C Contacts: 79,257,712 (113897.30% / 91.40%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 10% - 70% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 48%
 Cis/all (FF and RR orient): 61.5%
Inter-chromosomal: 15,982,263  (22967.31% / 18.43%)
Intra-chromosomal: 63,275,449  (90929.99% / 72.97%)
Short Range (<20,000bp): 43,523,745  (62545.80% / 50.19%)
Long Range (>20,000bp): 19,751,704  (28384.19% / 22.78%)