Experiment description: Juicer version 1.5.6;22 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 22 -d /mnt/storage/home/manuriddinov/scratch/fastq/NB/MMC_aux2 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/chr/hg38/hg38.chr.sizes -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/chr/hg38/hg38.fa -s none -q 30 -n MMC_aux2 -l 1000000,500000,250000,100000,50000,25000,10000,5000,1000 -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/NB/MMC_aux2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  65,045
 Normal Paired: 40,915,303 (62903.07%)
 Chimeric Paired: 10,590,567 (16281.91%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 45,602,816 (70109.64%)
 Ligation Motif Present: 97,173,731 (149394.62%)
Alignable (Normal+Chimeric Paired): 51,505,870 (79184.98%)
Unique Reads: 83,497,527 (128,368.86%)
PCR Duplicates: 811,087 (1,246.96%)
Optical Duplicates: 2,209,505 (3,396.89%)
Library Complexity Estimate: 4,353,590,412
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 13,259,732 (20385.47% / 15.88%)
Hi-C Contacts: 70,237,795 (107983.39% / 84.12%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 11% - 68% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 43%
 Cis/all (FF and RR orient): 56.6%
Inter-chromosomal: 17,446,517  (26822.23% / 20.89%)
Intra-chromosomal: 52,791,278  (81161.16% / 63.22%)
Short Range (<20,000bp): 34,274,863  (52694.08% / 41.05%)
Long Range (>20,000bp): 18,516,415  (28467.08% / 22.18%)