Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 2 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-22_BGI/U87 -s none -p /data/nyt/Databases/hg38/GRCh38_no_alt_analysis_set_GCA_000001405.15.fasta.chromsizes -z /data/nyt/Databases/hg38/GRCh38_no_alt_analysis_set_GCA_000001405.15.fasta -D /data/nyt/MMO/Tools/juicer1.6_compact -t 2                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  122,708
 Normal Paired: 85,632 (69.79%)
 Chimeric Paired: 30,339 (24.72%)
 Chimeric Ambiguous: 6,125 (4.99%)
 Unmapped: 612 (0.50%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 115,971 (94.51%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-26T07:44:44,872]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 114,228 (93.09%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 1,743 (1.42%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 13,833 (11.27% / 12.11%)
Hi-C Contacts: 100,395 (81.82% / 87.89%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 82% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 24% - 25% - 26%
 DE: 72%
 Cis/all (FF and RR orient): 79.9%
Inter-chromosomal: 5,601  (4.56% / 4.90%)
Intra-chromosomal: 94,794  (77.25% / 82.99%)
Short Range (<20,000bp): 80,556  (65.65% / 70.52%)
Long Range (>20,000bp): 14,238  (11.60% / 12.46%)