Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 4 threads; /home/mirmir/work/progs/juicer-master/CPU/juicer.sh: line 338: java: command not found; /home/mirmir/work/progs/juicer-master/CPU/juicer.sh -t 4 -S final -d /home/mirmir/work/fastq/Darevska/DA1 -p /sf/storage/gmo/mirmir/data/Darevska/daAr.chr.sizes -q 30 -s none -n daAr -l 2500000,1000000,500000,250000,100000,50000,25000,10000 -z /sf/storage/gmo/mirmir/data/Darevska/daAr.fa -o /sf/storage/gmo/mirmir/out/Darevska -D /home/mirmir/work/progs/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  71,459
 Normal Paired: 32,827 (45.94%)
 Chimeric Paired: 26,418 (36.97%)
 Chimeric Ambiguous: 12,096 (16.93%)
 Unmapped: 118 (0.17%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 59,245 (82.91%)
Unique Reads: 57,826 (80.92%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 1,419 (1.99%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 14,837 (20.76% / 25.66%)
Hi-C Contacts: 42,989 (60.16% / 74.34%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 12% - 64% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 24% - 25% - 26%
 DE: 40%
 Cis/all (FF and RR orient): 62.5%
Inter-chromosomal: 9,535  (13.34% / 16.49%)
Intra-chromosomal: 33,454  (46.82% / 57.85%)
Short Range (<20,000bp): 24,015  (33.61% / 41.53%)
Long Range (>20,000bp): 9,439  (13.21% / 16.32%)